PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02381.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 345aa    MW: 39091.9 Da    PI: 8.8606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02381.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-101365255
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
                      HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                             r+  + +E++RR++++  ++eL +llP+ +   +s+   s  +    Av+YIk+Lq
  mrna02381.1-v1.0-hybrid 13 RADRKTIEKNRRNQMKALYSELNSLLPHhQ---HSREvTSLPDQIDAAVNYIKKLQ 65
                             566789**********************55...88889*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.02E-7969No hitNo description
SuperFamilySSF474593.27E-101179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.1981164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-101368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-61465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-61770IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDQQQYPSSS SCRADRKTIE KNRRNQMKAL YSELNSLLPH HQHSREVTSL PDQIDAAVNY  60
IKKLQTNLEK LRAKKDRHMG VERITNNRNG AYGSGPNGSP QIEIREIGSA LDVVLITGLD  120
FQFMFEGAIR LLLEEGADIV NASFSVVEDT IFHTIHSKIE ECAPGTVAAR ISDRLRKFVN  180
EASRSSSITL GSTRPCRELN YTKKLQSNMD KTREKKDNLM RVGFSVHVNL ACGFACFLMR  240
ELADIVNASF SVVEDAIFHI IDSKIPVCLV VKSWIIVSMG QLVFQFILPT WAREWVLTAK  300
LFVHRSSGFS DDFVFKFHAE EQSSIMMQRQ SQVLKMTCNE MKHK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294013.11e-134PREDICTED: transcription factor bHLH126
TrEMBLM5WPJ81e-79M5WPJ8_PRUPE; Uncharacterized protein
STRINGPOPTR_0011s05320.12e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-44bHLH family protein